58. Tailed-Hoogsteen Triplex DNA Silver Nanoclusters Emit Red Fluorescence upon Target miRNA Sensing. Yadavalli HC, Park S, Kim Y, Nagda R, Kim TH, Han MK, Jung IL, Bhang YJ, Yang WH, Dalgaard LT, Yang SW*, Shah P. Small. 2023 Nov 15

57. Circulating Extracellular-Vesicle-Incorporated MicroRNAs as Potential Biomarkers for Ischemic Stroke in Patients With Cancer. Bang OY, Kim EH, Oh MJ, Yoo J, Oh GS, Chung JW, Seo WK, Kim GM, Ahn MJ, Yang SW; Investigators of the OASIS-CANCER Study.J Stroke. 2023 May 2. doi: 10.5853/jos.2022.02327. 

56. The HOS15-HDA9 complex associates with HYL1 to modulate miRNA expression in response to ABA signaling. Park J, Giudicatti AJ, Bader ZE, Han MK, Møller C, Arce AL, Xu ZY, Yang SW*, Manavella PA*, Yun DJ*. Plant Cell. 2023 May 17:koad132. doi: 10.1093/plcell/koad132

55. Genome-wide signatures of adaptation to extreme environments in red algae Cho CH, Park SI, Huang TY, Lee Y, Ciniglia C, Yadavalli HC, Yang SW, Bhattacharya D, Yoon HS. Nature Commun. 2023 Jan 4;14(1):10. doi: 10.1038/s41467-022-35566-x. 

 

54. The nucleolus is the site for inflammatory RNA decay during infection Lee TA, Han H. Polash A, Cho SK, Lee JW, Ra EA, PArk A, Kang S, Choi JL, Kim JH, Lee JE, Min KW, Yang SW, Hafner M, Lee I, Yoon JH, and Park B*.  Nature Commun. 2022 Sep 3;13(1):5203. doi: 10.1038/s41467-022-32856-2.

 

53. Silver Nanoclusters Serve as Fluorescent Rivets Linking Hoogsteen Triplex DNA and Hairpin-Loop DNA Structures Riddhi Nagda, Sooyeon Park, IL LAE JUNG, Keonwook Nam, Hari Chandana Yadavalli, Young Min Kim, Kyungjik Yang, Jooyoun Kang, Peter Waaben Thulstrup, Morten Jannik Bjerrum, Minhaeng Cho, Tae-Hwan Kim*, Young Hoon Roh*, Pratik Shah*, Seong Wook Yang* ACS NANO 2022 Aug

 

52. Circulating microRNAs differentially expressed in Koream Alzheimer's patients with brain Aβ accumulation activate amyloidogenesis  Sakulrat Mankhong, Sujin Kim, Sohee Moon, Seong-Hye Choi, Hyo-Bum Kwak, Dong-Ho Park, Pratik Shah, Phyl Hyu Lee*, Seong Wook Yang*, Ju-Hee Kang* The Journals of Genontrology series A 2022 May 

 

51. Transcriptome analysis revealed that jasmonic acid biosynthesis/signlaing is involved in plant response to Strontium stress   Pyo YJ, Moon HW, Nugroho A.B.D. Yang SW,  Chung IL, Chang HW, Kim DH. Ecotoxicology and Environmental Safety 2022 April 237, 113552 

 

50. Circulating Extracellular Vesicles in Stroke Patients Treated with Mesenchymal Stem Cells: A Biomarker Analysis of Randomized Trial Bang OY, Kim EH, Cho HY, Oh JM,  Chung JW, Chang HW, Kim YH, Yang SW, Chopp M. STROKE 2022 STROKEAHA 121.036545 Mar

 

49. HYL1-CLEAVAGE SUBTILASE 1 (HCS1) Suppresses miRNA biogenesis in response to light-to-dark transition Jung HJ, Choi SW, BOO KH, Kim J, Oh YK, Han MK, Ryu MY, Lee CW, Møller C, Shah P, Kim GM, Yang W, Cho SK*, Yang SW*. Proc. Natl. Acad. Sci. USA 2022 Feb

 

48. Light-Stablized FHA2 suppresses miRNA biogenesis through interactions with DCL1 and HYL1 Park SJ, Choi SW, Kim GM, Møller C, Pai HS*, Yang SW*. Mol Plant. 2021 Apr 5;14(4):647-663

 

47. Strontium stress disrupts miRNA biogenesis by reducing HYL1 protein levels in Arabidopsis Pyo Y, Kim GM, Choi SW, Song CY, Yang SW*, Jung IL*. Ecotoxicology and environmental safety. 2020;204:111056-111056.

46. Formation and Structure of Fluorescent Silver Nanoclusters at Interfacial Binding Sites Facilitating Oligomerization of DNA Hairpins Geczy R, Christensen NJ, Rasmussen KK, Kálomista I, Tiwari MK, Shah P, Yang SW*, Bjerrum MJ*, Thulstrup PW*. Angewandte Chemie (International ed.). 2020;59:16091-16097.

45. Noncanonical Head-to-Head Hairpin DNA Dimerization Is Essential for the Synthesis of Orange Emissive Silver Nanoclusters. Shah P, Nagda R, Jung IL, Bhang YJ, Jeon SW, Lee CS, Do C, Nam K, Kim YM, Park S, Roh YH*, Thulstrup PW*, Bjerrum MJ*, Kim TH*, Yang SW*. ACS NANO. 2020;14:8697-8706.

44. Light Triggers the miRNA-Biogenetic Inconsistency for De-etiolated Seedling Survivability in Arabidopsis thaliana. Choi SW, Ryu MY, Viczián A, Jung HJ, Kim GM, Arce AL, Achkar NP, Manavella P, Dolde U, Wenkel S, Molnár A, Nagy F, Cho SK*, Yang SW*. Mol Plant. 2020 Mar 2;13(3):431-445.

 

43. Enrichment of Exosome-Like Extracellular Vesicles from Plasma Suitable for Clinical Vesicular miRNA Biomarker Research Moon S, Shin DW, Kim S, Lee YS, Mankhong S, Yang SW, Lee PH, Park DH, Kwak HB, Lee JS, Kang JH. Journal of clinical medicine. 2019;8:1995.

 

42. Dynamic Regulation of miRNA expression by Functionally Enhanced Placental Mesenchymal Stem Cells PromotesHepatic Regeneration in a Rat Model with Bile Duct Ligation.  Kim JY, Jun JH, Park SY, Yang SW, Bae SH, Kim GJ. Int J Mol Sci. 2019 Oct 24;20(21):5299. doi: 10.3390/ijms20215299.

 

41. Keep calm and carry on: miRNA biogenesis under stress Manavella PA*, Yang SW*, Palatnik J*. The Plant journal 2019;99:832-843.

40. Inverse Correlation Between MPSR1 E3 Ubiquitin Ligase and HSP90.1 Balances Cytoplasmic Protein Quality Control Kim JH, Oh TR, Cho SK, Yang SW*, Kim WT*. Plant Physiology 2019;180:1230-1240.

39. Classification of barley U-box E3 ligases and their expression patterns in response to drought and pathogen stresses Ryu MY, Cho SK, Hong Y, Kim J, Kim JH, Kim GM, Chen YJ, Knoch E, Møller BL, Kim WT*, Lyngkjær MF*, Yang SW*. BMC genomics. 2019;20:326-326.

38. Structural Influence on the Post-Clustering Stability of DNA/AgNCs Fluorescence Nagda R, Shah P, Lee CS, Park S, Yang SW*. Nanomaterials (Basel, Switzerland). 2019;9:667.

 

37. A Quick HYL1-Dependent Reactivation of MicroRNA Production Is Required for a Proper Developmental Response after Extended Periods of Light Deprivation Achkar NP, Cho SK, Poulsen C, Arce AL, Re DA, Giudicatti AJ, Karayekov E, Ryu MY, Choi SW, Harholt J, Casal JJ, Yang SW*, Manavella PA* Developmental cell. 2018;46:236-247.e6.

36. Synthetic MicroProteins: Versatile Tools for Posttranslational Regulation of Target Proteins Dolde U, Rodrigues V, Straub D, Bhati KK, Choi S, Yang SW, Wenkel S. Plant physiology (Bethesda). 2018;176:3136-3145.

35. BPH1, a novel substrate receptor of CRL3, plays a repressive role in ABA signal transduction Woo OG, Kim SH, Cho SK, Kim SH, Lee HN, Chung T, Yang SW, Lee JH, Plant Mol Biol, 21 Mar 2018

34. Diurnal regulation of cyanogenic glucoside biosynthesis and endogenous turnover in cassava Frederik Bogeskov Schmidt, Seok Keun Cho, Carl Erik Olsen, Seong Wook Yang, Birger Lindberg Moller and Kirsten Jorgensen, Plant Direct, 26 FEB 2018, Volume 2, Issue 2

 

33. MPSR1 is a cytoplasmic PQC E3 ligase for eliminating emergent misfolded proteins in Arabidopsis thaliana Kim JH, Cho SK, Oh TR, Ryu MY, Yang SW*, Kim WT*. Proc Natl Acad Sci U S A. 2017 Nov 14;114(46):E10009-E10017.

 

32. AtAIRP2 E3 Ligase Affects ABA and High-Salinity Responses by Stimulating Its ATP1/SDIRP1 Substrate Turnover Oh TR, Kim JH, Cho SK, Ryu MY, Yang SW, Kim WT*, Plant Physiol. 2017 Aug; 174(4): 2515-2531

31. Development of a virus-induced gene silencing (VIGS) system for Spinacia oleracea L. Jungmin Lee, Dang-Veit Cao, Jiwon Kim, Reniel S. Pamplona, Jongcheol Ahn, Seok-Keun Cho, Seong Wook Yang, Key-Zung Riu, Kyung-Hwan Boo, In Vitro Cellular & Developmental Biology - Plant, April 2017, Volume 53, Issue 2, pp 97-103

 

30. RING E3 ligases: Key regulatory elements are involved in abiotic stress responses in plants  Cho SK, Ryu MY, Kim JH, Hong JS, Oh TR, Kim WT*, Yang SW*. BMB Rep. 2017 Aug;50(8):393-400

29. KETCH1 imports HYL1 to nucleus for miRNA biogenesis in Arabidopsis Zhang Z, Guo X, Ge C, Ma Z, Jiang M, Li T, Koiwa H, Yang SW, Zhang X (2017)  Proc Natl Acad Sci U S A 114(15):4011-4016.

28. HIGLE is a bifunctional homing endonuclease that directly interacts with HYL1 and SERRATE in Arabidopsis thaliana Cho SK, Ryu MY, Poulsen C, Kim JH, Oh TR, Choi SW, Kim M, Yang JY, Boo KH, Geshi N, Kim WT*, Yang SW* (2017) FEBS Lett 591(10):1383-1393

27. MicroRNA Biomarkers in Neurodegenerative Diseases and Emerging Nano-Sensors Technology Shah P, Cho SK, Thulstrup PW, Bjerrum MJ, Lee PH, Kang JH, Bhang YJ, Yang SW* (2017) M J Mov Disord 10(1):18-28

 

26. Regulation of MIR165/166 by class II and class III homeodomain leucine zipper proteins establishes leaf polarity Merelo P, Ram H, Pia Caggiano M, Ohno C, Ott F, Straub D, Graeff M, Cho SK, Yang SW, Wenkel S, Heisler MG (2016) Proc Natl Acad Sci U S A 113(42):11973-11978

25. Post-Translational Regulation of miRNA Pathway Components, AGO1 and HYL1, in Plants Cho SK, Ryu MY, Shah P, Poulsen CP, Yang SW* (2016) Mol Cells (Review) 39(8):581-6

24. Locking-to-unlocking system is an efficient strategy to design DNA/silver nanoclusters (AgNCs) probe for human miRNAs Shah P, Choi SW, Kim HJ, Cho SK, Bhang YJ, Ryu MY, Thulstrup PW, Bjerrum MJ, Yang SW* (2016)  Nucleic Acids Res 44(6):e57

23. Arabidopsis Toxicos en Levadura 78 (AtATL78) mediates ABA-dependent ROS signaling in response to drought stress. Suh JY, Kim SJ, Oh TR, Cho SK, Yang SW*, Kim WT* (2016)  BBRC 469(1):8-14

 

22. PUB22 and PUB23 U-BOX E3 ligases directly ubiquitinate RPN6, a 26S proteasome lid subunit, for subsequent degradation in Arabidopsis thaliana. Cho SK, Bae H, Ryu MY, Yang SW*, Kim WT* (2015)  BBRC 64(4):994-9

21. Cesium toxicity alters microRNA processing and AGO1 expressions in Arabidopsis thaliana Ilae Jung, Moonyoung Ryu, Seok keun Cho, Pratik Shah, Ju Hye Lee, Hansol Bae, In Gyu Kim and Seong Wook Yang* (2015)  PLOS ONE  10(5):e0125514

20. DNA/RNA chimera templates improve the emission intensity and target accessibility of silver nanocluster-based sensors for human microRNA detection Pratik Shaha, Sukwon Choi, Hojin Kim, Seok Keun Cho, Peter W. Thulstrup, Morten Jannik Bjerrumb, Yong joo Bahng, Jong Cheol Ahn, and Seong Wook Yang* (2015)  Analyst 140(10):3422-30

 

19. COP1 E3 ligase protects HYL1 to retain miRNA biogenesis Cho SK, Ben Chaabane S, Shah P, Poulsen P.P., and Yang SW* (2014) Nature Commun. 23;5:5867

18. DNA/RNA chimera indicates the flexibility of the backbone influences the encapsulation of fluorescent AgNCs emitters. Pratik Shaha, Peter W. Thulstrupb, Seok Keun Cho, Morten Jannik Bjerrumb, and Seong Wook Yang* (2014) Chem Comm. 50:13592-5.

17. Insights into the structural determinants for the formation of fluorescent silver nanoclusters on DNA, RNA and DNA-RNA chimeras PW Thulstrup, P Shah, SK Cho, MJ Bjerrum, SW Yang* (2014) Journal of Biological Inorganic Chemistry 19, S826-S827, proceedings

16. Fold-back anchor DNA-templated silver nanoclusters for miRNA detection P Shah, SK Cho, PW Thulstrup, SW Choi, YJ Bhang, JC Ahn, MJ Bjerrum, and Yang SW* (2014) Journal of Biological Inorganic Chemistry 19, S769-S769, proceedings

15. Multiplexed microRNA Detection Using Lanthanide-Labeled DNA Probes and Laser Ablation Inductively Coupled Plasma Mass Spectrometry (LA-ICP-MS). de Bang TC, Shah P, Cho SK, Yang SW, Husted S. (2014) Analytical Chemistry 86:6823-6.

14. In solution multiplex miRNA detection using DNA-templated silver nanocluster probes. Shah P, Thulstrup PW, Cho SK, Bhang YJ, Ahn JC, Choi SW, Bjerrum MJ*, Yang SW* (2014) Analyst 139:2158-66

13. Gene silencing of Sugar dependent 1 (JcSDP1), encoding a patatin-domain triacylglycerol lipase, enhances seed oil accumulation in Jatropha curcas Mi Jung Kim†, Seong Wook Yang†, Hui-Zhu Mao, Sivaramakrishnan P Veena, Jun-Lin Yin, Nam-Hai Chua (2014) Biotechnology for biofuels 8;7(1):36

12. Effect of salts, solvents and buffer on miRNA detection using DNA silver nanocluster (DNA/AgNCs) probes. Shah P, Cho SK, Thulstrup PW, Bhang YJ, Ahn JC, Choi SW, Rørvig-Lund A, Yang SW* (2014) Nanotechnology 25:045101.

 

11. Two aquaporins of Jatropha are regulated deferentially during drought stress and subsequent recovery. PJang HY, Yang SW, Carlson JE, Ku YG, Ahn SJ. (2013)  J Plant Physiol. 170:1028-38

10. STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis. Ben Chaabane S, Liu R, Chinnusamy V, Kwon Y, Park JH, Kim SY, Zhu JK, Yang SW*, Lee BH*. (2013) Nucleic Acids Res. 41:1984-97. Faculty 1000

 

9. Design Aspects of Bright Red Emissive Silver Nanoclusters/DNA Probes for MicroRNA Detection. Pratik Shah, Andreas Rørvig-Lund, Samir Ben Chaabane, Peter Waaben Thulstrup, Henrik Grum Kjaergaard, Eduard Fron, Johan Hofkens, Seong Wook Yang*, and Tom Vosch (2012) ACS NANO 6:8803-14.

8. Arabidopsis DRB4 protein in antiviral defense against Turnip yellow mosaic virus infection. Anna Jakubiec, Seong Wook Yang, Nam-Hai Chua (2012) The Plant Journal 69:14-25

 

7. Rapid detection of miRNA by a silver cluster DNA probe. Seong Wook Yang* and Tom Vosch* (2011) Analytical Chemistry 83:6935-6939

 

6. Structure of Arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing. Seong Wook Yang, Hong-Ying Chen, Jing Yang, Nam-Hai Chua and Y. Adam Yuan  (2010) Structure 118:594-605.

5. Suppression of the ER-Localized AAA ATPase NgCDC48 Inhibits Tobacco Growth and Development. Hansol Bae, Soo Min Choi, Seong Wook Yang, Hyun-Sook Pai, and Woo Taek Kim (2009) Mol Cells 28:57-65

4. LAF1 and HFR1 associate with FHY1 and FHL to transmit phyA signals for inhibition of hypocotyl elongation. Seong Wook Yang, In-Cheol Jang, Rossana Henriques and Nam-Hai Chua (2009) The Plant Cell 21:1341-1359

3. tructure of the DNA-binding domain of NgTRF1 reveals unique features of plant telomere-binding proteins. Ko S, Jun SH, Bae H, Byun JS, Han W, Park H, Yang SW, Park SY, Jeon YH, Cheong C, Kim WT, Lee W, Cho HS. (2008) Nucleic Acids Res. 36:2739-2755

2. Independent and interdependent functions of LAF1 and HFR1 in phytochrome A signaling. In-Cheol Jang, Seong Wook Yang, Jun-Yi Yang and Nam-Hai Chua (2007) Genes and Development 15:2100-2111

1. FHL is required for full phytochrome A signaling and shares overlapping functions with FHY1. QingWen Zhou, Peter D. Hare, Seong Wook Yang, Mathias Zeidler, Li-Fang Huang and Nam-Hai Chua (2005) The Plant Journal 43: 356-370